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Novel designs of Josephson weak links based on semiconducting nanowires combined with circuit QED techniques have enabled the resolution of their fine structure due to spin-orbit interactions, opening a path towards Andreev spin qubits. Nevertheless, direct manipulation of the spin within a given Andreev state is in general suppressed compared to inter-doublet manipulation in the absence of Zeeman effects. In addition, noisy spin-flip mechanisms limit any coherent manipulation protocol to spin post-selection. We propose a combination of a spin polarization protocol analogous to sideband cooling with stimulated Raman adiabatic passage specifically tailored for these systems. We show this approach is robust for a large range of design parameters, including the currently rather stringent coherence times.