论文标题
线粒体网络的通用动力学:有限尺寸的缩放分析
Universal dynamics of mitochondrial networks: a finite-size scaling analysis
论文作者
论文摘要
越来越多的证据表明,线粒体网络的结构几乎是临界点,这是一个中间状态,位于秩序和无序之间。这样的描述非常适合这样一种观念,即一般而言,生物系统可能会受益于远程相关性和较大的灵活性。尽管该提议具有吸引力,但仍然缺乏将这些网络引起关键性的可能场景的清晰理解。在这项工作中,我们比较了从基于无量纲的代理(AB)模型和空间显式(SE)模型中出现的线粒体网络的行为,其中节点嵌入了2D晶格上。在这两种情况下,我们描述了控制参数的位置,线粒体网络表现出动态相变以及多个网络特征的尺寸依赖性。此外,我们表明,来自小鼠胚胎成纤维细胞的线粒体网络具有与使用AB模型生成的拓扑相似的拓扑,而其通用行为则由SE模型更好地描述。使用对模型和经验数据进行的有限尺寸缩放分析,我们定义了它们所属的通用类别,并为管理线粒体网络形成的机制提供了理论界限。我们的发现预测了在生理和病理条件下实际线粒体网络预期的动态行为的全部曲目。
A growing body of evidence suggests that the structure of mitochondrial networks is poised near criticality, an intermediate regime lying in between order and disorder. Such description fits well with the idea that biological systems, in general, may benefit from the long-range correlations and large flexibility conferred by a critical regime. Despite the attractiveness of this proposal, a clear understanding of the possible scenarios leading these networks to criticality is still lacking. In this work, we compared the behavior of mitochondrial networks emerging from a dimensionless agent-based (AB) model and a spatially explicit (SE) model, in which nodes are embedded on a 2D lattice. In both scenarios, we described the position of the control parameter at which mitochondrial networks exhibit a dynamical phase transition as well as the size-dependency of several network features. Furthermore, we showed that the mitochondrial networks from mouse embryonic fibroblasts presented similar topologies to the ones generated using the AB model, while their universal behavior is better described by a SE model. Using finite-size scaling analysis conducted on models and empirical data we defined the universality classes they belong and provided the theoretical boundaries for the mechanisms governing mitochondrial network formation. Our findings predict the full repertoire of dynamical behavior expected for real mitochondrial networks under physiological and pathological conditions.