论文标题
同质体内合奏的二维模拟回火,并以快速的体重确定
Two-dimensional simulated tempering for the isobaric-isothermal ensemble with fast on-the-fly weight determination
论文作者
论文摘要
我们提出了一种方法,以扩展快速的即时重量确定方案,以模拟调速到二维空间不仅包括温度,还包括压力。在模拟的回火模拟中,根据梯形规则,对温度更高和压力更新的重量参数独立自我更新。为了测试算法的有效性,我们将提出的方法应用于明确水的肽,Chignolin。将所有权重参数设置为零后,在模拟过程中快速确定权重参数。模拟在整个温度压力空间中实现了均匀的随机行走。
We propose a method to extend the fast on-the-fly weight determination scheme for simulated tempering to two-dimensional space including not only temperature but also pressure. During the simulated tempering simulation, weight parameters for temperature-update and pressure-update are self-updated independently according to the trapezoidal rule. In order to test the effectiveness of the algorithm, we applied our proposed method to a peptide, chignolin, in explicit water. After setting all weight parameters to zero, the weight parameters were quickly determined during the simulation. The simulation realised a uniform random walk in the entire temperature-pressure space.