论文标题
使用R-Paralalleel集合测量形状关系
Measuring shape relations using r-parallel sets
论文作者
论文摘要
生物对象的几何测量构成了许多定量分析的基础。 Hausdorff测量(例如物体的体积和面积)是单个对象的简单且流行的描述符,但是,对于大多数生物学过程,对象之间的相互作用不容忽视,而相邻对象的形状和功能相互影响。 在本文中,我们介绍了基于空间过程理论对象之间几何相互作用的理论。我们的理论基于两个对象之间的关系:参考和观察到的对象。我们生成了参考对象的$ r $ - 平行集,我们计算$ r $ - 平行的集合和观察到的对象之间的交集,并在这些交叉点上定义了措施。我们的措施很简单,就像一个物体的体积和面积一样,但要描述有关单个对象及其成对几何关系形状的更多细节。最后,我们提出了一个汇总形状及其相互作用的摘要统计数据。 我们对成年啮齿动物的公开fib-SEM 3D数据集评估了这些措施。
Geometrical measurements of biological objects form the basis of many quantitative analyses. Hausdorff measures such as the volume and the area of objects are simple and popular descriptors of individual objects, however, for most biological processes, the interaction between objects cannot be ignored, and the shape and function of neighboring objects are mutually influential. In this paper, we present a theory on the geometrical interaction between objects based on the theory of spatial point processes. Our theory is based on the relation between two objects: a reference and an observed object. We generate the $r$-parallel sets of the reference object, we calculate the intersection between the $r$-parallel sets and the observed object, and we define measures on these intersections. Our measures are simple like the volume and area of an object, but describe further details about the shape of individual objects and their pairwise geometrical relation. Finally, we propose a summary statistics for collections of shapes and their interaction. We evaluate these measures on a publicly available FIB-SEM 3D data set of an adult rodent.